Section on Biological Chemistry

Lawrence A. Tabak, D.D.S., Ph.D., Chief

Mission


The Section on Biological Chemistry conducts basic research on biosynthesis, structure and function of glycoproteins, placing a special emphasis on mucin-type O-glycans.

Overview


Our laboratory studies the functions and biosynthesis of O-glycans. Mucin- glycoproteins are heavily decorated with carbohydrate side-chains, termed O-glycans, which are often clustered within repeating amino acids sequences of the protein (tandem repeats).

Functionally, membrane-bound mucins are involved in signal transduction events whereas secreted mucins contribute to the formation of extracellular matrix or to the gel-like mucus coat which envelopes mucosal surfaces of the body thereby forming the most exterior face of the innate immune system. Although it is known that O-glycans are ubiquitous among proteins, the precise nature of the “O-glycome” remains to be defined. We have approached this by both top-down and bottom-up proteomic studies as well as investigations of the substrate specificities of the multi-gene family of enzymes that are responsible for the formation of O-glycans, the UDP-GalNAc:polypeptide N-Acetylgalactosaminyltransferases (ppGalNAcTs).  Although no consensus amino acid sequence has emerged that is both necessary and sufficient for O-glycan formation, two classes of ppGalNAcTs – those which readily glycosylate peptide directly (“naked” or unglycosylated peptide) and those which will only act on glycopeptide substrates (peptides previously decorated with O-glycans) have been identified. This strongly implies that there is a hierarchical acquisition of O-glycans. Why Nature requires such precision in selecting which specific amino acids will be glycosylated is not yet known, although it may have to do with the ability of surface carbohydrates to form a “polyvalent array”, enabling cells or molecules to sample each other before entering into specific, long-term relationships via high affinity interactions with either carbohydrates and/or proteins.

Current Projects:


Our major efforts are focused on the roles played by GalNAc-Ts during development and furthering our understanding of the mechanisms that underlie GalNAc-T function. Specific projects include:

  1. Understanding the role(s) played by GalNAc-Ts in early development using sea urchins (S. purpuratus) as a model [Tom Beres and Divya Patel; in collaboration with the Angerer Laboratory, NIDCR, NIH].
  2. Understanding the role(s) played by GalNAc-Ts in heart development (Sharon Stevens in collaboration with Ten Hagen Laboratory, NIDCR, NIH)
  3. Identification of the molecular mechanisms key to the transport of mucin-type O-glycans through the biosynthetic and endocytic pathways; Elucidation of the protein machinery that regulates ppGalNAcTs transport and activity through the biosynthetic pathway [Raul Rojas and Lauren Beck]
  4. Studies on the mechanisms of retaining glycosyltransferase using hybrid quantum chemical/molecular mechanical approaches (Raul Rojas and Divya Patel, in collaboration with Laura Masgrau, Universitat Autònoma de Barcelona, Spain)
  5. Analyzing the role(s) played by GalNAc-Ts in lipid metabolism (Tom Beres; in collaboration with A.G. Holleboom, Jan Albert Kuivenhoven, and colleagues, University of Amsterdam])
  6. Analyzing the role(s) played by ppGa1NAcTs in otitis media (in collaboration with Qing Zheng, CWRU)

Tabak Group Members


Please click on individual lab members’ names to review their ongoing efforts in greater detail:

Nadine Samara, PhD – Staff Scientist
Amy Fernandez – Post Bacc IRTA
Jessi Becker – Post Bacc IRTA

Last Reviewed
July 2018